PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta002222

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

VOZ

Protein Properties

Length: 350aa MW: 39261.8 Da PI: 5.1421

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S20492475	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-32218	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	407.8	2.2e-125	76	286	2	212
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsll 101 pp aflgpkcalwdc+rpaq s+w+qdycs+fh +alneg+pg+ pvlrp+gidlkdgllfaal ak+ gk vgipecegaatakspwna+elfdl +l Pta002222 76 PPEAFLGPKCALWDCPRPAQRSDWCQDYCSNFHGIVALNEGPPGMGPVLRPGGIDLKDGLLFAALDAKTMGKAVGIPECEGAATAKSPWNAPELFDLFVL 175 799*********************************************************************************************** PP VOZ 102 egetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvs 201 +ge irewlffdkprrafesgnrkqrslpdy+grgwhesrkqvmk++gglkrsyymdpqps++fewhlyeye+n++da+alyrlelk+vd+kk++k+kv+ Pta002222 176 QGEVIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDLGGLKRSYYMDPQPSTQFEWHLYEYEMNNCDACALYRLELKQVDSKKNTKAKVM 275 ************************************************************************************************ PP VOZ 202 kdsladlqkkl 212 ds dlq+k+ Pta002222 276 GDSDFDLQHKI 286 ******997 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
XDFLWTCQSQ AQAIDGTSRS ENIHAEPLLQ TIDEGVEAAA QMNRDFNHNL CLSFDPEVEE 60 ETIPEFQGPC PGISLPPEAF LGPKCALWDC PRPAQRSDWC QDYCSNFHGI VALNEGPPGM 120 GPVLRPGGID LKDGLLFAAL DAKTMGKAVG IPECEGAATA KSPWNAPELF DLFVLQGEVI 180 REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQVMK DLGGLKRSYY MDPQPSTQFE 240 WHLYEYEMNN CDACALYRLE LKQVDSKKNT KAKVMGDSDF DLQHKIRLSA GFSVDTKGST 300 KGRSKLTQKN GSKYSYSTAN PVAPVSNHFL YGQAVQYGYY AEETNGYYET

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

XDFLWTCQSQ AQAIDGTSRS ENIHAEPLLQ TIDEGVEAAA QMNRDFNHNL CLSFDPEVEE  60
ETIPEFQGPC PGISLPPEAF LGPKCALWDC PRPAQRSDWC QDYCSNFHGI VALNEGPPGM  120
GPVLRPGGID LKDGLLFAAL DAKTMGKAVG IPECEGAATA KSPWNAPELF DLFVLQGEVI  180
REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQVMK DLGGLKRSYY MDPQPSTQFE  240
WHLYEYEMNN CDACALYRLE LKQVDSKKNT KAKVMGDSDF DLQHKIRLSA GFSVDTKGST  300
KGRSKLTQKN GSKYSYSTAN PVAPVSNHFL YGQAVQYGYY AEETNGYYET

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.5251	0.0	root\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011626288.1	1e-152	transcription factor VOZ1
Refseq	XP_011626289.1	1e-152	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-127	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	W1Q0P1	1e-151	W1Q0P1_AMBTC; Uncharacterized protein
STRING	ERN14021	1e-151	(Amborella trichopoda)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]