PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002285
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 346aa    MW: 39647 Da    PI: 7.6319
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20493284PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-22551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011206230123
                EEETTTTEEESSHHHHHHHHHH..T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                + C+ C+k ++  ++++ H+++  H
  Pta002285 206 FFCELCNKQYKLAMEFEAHLSSydH 230
                67*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004437.6E-1864109IPR000467G-patch domain
PROSITE profilePS5017416.95666111IPR000467G-patch domain
PfamPF015858.9E-1667107IPR000467G-patch domain
SuperFamilySSF576678.98E-5187243No hitNo description
PfamPF121716.0E-5206233IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280208230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MENRWSNSQN GMSAREKRQR EREEAYEASL VEDLGEDFRL PINHRPTENL DTDNLEQASV  60
DTQLTSSNIG FRLLQKMGWK GKGLGKEEQG ITEPIKAGVR EAKLGVGKQE QDDYFTSEEN  120
IQRKKLEVEV EETEELTKKR ENAAXRPYVR MSFQGDIHFG GSFAHLLRFL LPGGFSCLLR  180
AHDENPVVAE REQKIQSEVK EIRKVFFCEL CNKQYKLAME FEAHLSSYDH NHRKRFKEMK  240
EMYSGSSRDD RQKREQLRQE REMAKFVQIA DAQRSQQQQE DSRSVPTSGT ERTATSLAVQ  300
DQRKTLKFGF ATKAVPSKTS SGAASKKAKV LSKVSSVFGN DSDEES
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.19880.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241427.11e-154PREDICTED: G patch domain-containing protein 8-like isoform X1
RefseqXP_010241428.11e-154PREDICTED: G patch domain-containing protein 8-like isoform X1
TrEMBLA0A1U7Z2G91e-153A0A1U7Z2G9_NELNU; G patch domain-containing protein 8-like isoform X1
STRINGXP_010241427.11e-154(Nelumbo nucifera)