PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002334
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 343aa    MW: 37781.9 Da    PI: 8.5429
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20496554PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-72441PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.7e-29153211259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ ++s+ prsYY+C++  gCpvkk+v+r+aedp++v++tY+geH+h+
  Pta002334 153 SDGCHWRKYGQKMTRNSTLPRSYYKCAMVpGCPVKKQVQRCAEDPTIVITTYKGEHTHS 211
                7**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31141211IPR003657WRKY domain
SuperFamilySSF1182901.44E-26146212IPR003657WRKY domain
PROSITE profilePS5081125.201147213IPR003657WRKY domain
SMARTSM007742.9E-34152212IPR003657WRKY domain
PfamPF031069.5E-25154210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAKLVADINH LKEKNQSLNS KLKRMISKYN DLRKHIGLLM QQRGIDGSQV CNPDHRIKDQ  60
VCAKYFTGSD HCWEQGEEKE KKKAKFMEDQ QLHSKKTKIE NGVTSYLDDN PCCDDKLPKN  120
QNQVLNRSSG EEAAAAPKRI VSVQTTSVTS LVSDGCHWRK YGQKMTRNST LPRSYYKCAM  180
VPGCPVKKQV QRCAEDPTIV ITTYKGEHTH SLSPLAIAVI HASTNQPTTC TSSPTITLDL  240
ADNQLNPAFY LHPAHLTAGS FQQLTPLSSD MGQVLDNQSQ VGQSAIMESV ASMKADPNFT  300
KALAVAIAGS ILKLGSPMEG MPQHPPPTHY TNDSTTSVNT SVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-21142212776Probable WRKY transcription factor 4
2lex_A4e-21142212776Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.178400.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-101A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-29WRKY family protein