PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002369
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 340aa    MW: 38516 Da    PI: 8.2827
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-24194PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52121391128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Pt+eelvv+yL+kk+++++l++ ++i++vd+yk++Pw+Lp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++++k +++ 
  Pta002369  12 LPPGFRFFPTEEELVVHYLCKKATSQSLPV-QIIADVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKgGKKR 110
                79****************************.89***************8888899***************************************966777 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfy g+apkg+kt+W+mheyrl
  Pta002369 111 VGVKKALVFYVGKAPKGSKTNWLMHEYRL 139
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-649165IPR003441NAC domain
PROSITE profilePS5100560.35912165IPR003441NAC domain
PfamPF023653.2E-2613139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGSRSAEADL HLPPGFRFFP TEEELVVHYL CKKATSQSLP VQIIADVDLY KYDPWQLPEK  60
ALFGEKEWYF FTPRDRKYPN GSRPNRAAGS GYWKATGADK PITAKGGKKR VGVKKALVFY  120
VGKAPKGSKT NWLMHEYRLA DLNTPARKKG SLRLDDWVLC RIYSKKISAE KLQREQKESS  180
NDVPMETIDE KEIENQPTSA SIEHSGIEES KPFSDNLNEL RPSTATYNAV PMNSNIYFQN  240
PGFFQNSTTP FIGNTLKAPV QNTAFNPISS SVNHHWTNCN SADLISRLHT DSSCSKPYSE  300
PISEKEEIQS SFXXENISXX KXLSLFNSXL EDIQNTXXYX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-841017118174NAC domain-containing protein 19
3swm_B1e-841017118174NAC domain-containing protein 19
3swm_C1e-841017118174NAC domain-containing protein 19
3swm_D1e-841017118174NAC domain-containing protein 19
3swp_A1e-841017118174NAC domain-containing protein 19
3swp_B1e-841017118174NAC domain-containing protein 19
3swp_C1e-841017118174NAC domain-containing protein 19
3swp_D1e-841017118174NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020254522.11e-100LOW QUALITY PROTEIN: NAC domain-containing protein 68-like
SwissprotQ52QH44e-93NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A0D6R3P91e-141A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGXP_010257746.19e-97(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-83NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]