PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002432
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 336aa    MW: 38439.7 Da    PI: 9.4301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21595235PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-118982551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.92e-1662148181
   trihelix   1 rWtkqevlaLiearr......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                rWt + +l+L++a+       + + +++r+k++  +W+ +s+++++ g+ r+++qC+++w+ +  +ykki++ e++  ++++s + +
  Pta002432  62 RWTSSDTLVLVNAKLveknmhSAGGAIKRTKSAIEKWRTISAHCHDNGLDRNATQCRDRWKHILPDYKKIRHYERNIPPGHVSYWNM 148
                8*************9555333334444467899*******************************************99999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-655130IPR009057Homeodomain-like
PROSITE profilePS500906.99255125IPR017877Myb-like domain
PfamPF138376.4E-1160143No hitNo description
CDDcd122032.78E-1762132No hitNo description
SuperFamilySSF466895.56E-594127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGPDDPNGVI HKDEISEQQV NHSMATVADV ICLPSNQEPR DLIPHEVRGK RKLSSEHKGR  60
VRWTSSDTLV LVNAKLVEKN MHSAGGAIKR TKSAIEKWRT ISAHCHDNGL DRNATQCRDR  120
WKHILPDYKK IRHYERNIPP GHVSYWNMTP KERMDKRLPT NYTKELYDAM NKHFGQKGND  180
VGDMIIDTSA SDHGTFEDCL TPAKNVIMHE NTMPETPLQS PGDTSTDRDK QYPGKKRKSS  240
SKTAGIKATL SENNKMIISN LKMAEEGRMK RHEKYCNLFE RRMEMDEKYL NHHAMNVQRM  300
INVEEQKVKA QRDLVSALNT IGQAMLKICE SPDTKG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.146120.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKP70.0B8LKP7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.19e-23Trihelix family protein