PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002479
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family LBD
Protein Properties Length: 334aa    MW: 37375.4 Da    PI: 8.0368
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21055639PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-37452PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.81.7e-284105197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C l+p++      ++q++++ +++k++G+s +++l+k+ pe  r+++++sl+yeA+ r+ +P+ G+vg+i++++++++q+++e +
  Pta002479   4 SCNGCRVLRKGCSDSCELRPCLqwiktSESQAQATVFLAKFYGRSGLMNLIKSGPEFLRPTLFRSLLYEACGRIVNPIFGSVGLIWSGNWHICQAAVESV 103
                6*********************9999878999****************************************************************9987 PP

     DUF260  96 ll 97 
                l 
  Pta002479 104 LK 105
                65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8793109IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRVSCNGCRV LRKGCSDSCE LRPCLQWIKT SESQAQATVF LAKFYGRSGL MNLIKSGPEF  60
LRPTLFRSLL YEACGRIVNP IFGSVGLIWS GNWHICQAAV ESVLKGYPLQ PLHPLNSLEI  120
ASPPPAAAAP QSMEAVADKL RNVRSQGRFK RPLYRKPSRD VKNLNLHALK DEEAAGILTG  180
SQAYNLRWRR CYPKEFQLIN AQPVNNFLSI DSSSDSDDLI RLKTGFESVK SDCNPIENRE  240
TRALSEGISE GPALSEGIEN QNECPLQNLF QQNDNNWVEN NIMRTELTDE RNLGLELTLG  300
SSMGETTQSH RKQLGSNCMD RPPLYRSLDL SLSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.182780.0embryo| needle
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265141.11e-68PREDICTED: LOB domain-containing protein 41-like
TrEMBLA0A0D6R1711e-82A0A0D6R171_ARACU; Uncharacterized protein
STRINGXP_010265141.14e-68(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.17e-65LOB domain-containing protein 40