PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002573
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 328aa    MW: 36220.9 Da    PI: 4.5052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26636312PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-51894PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.2e-11237280654
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 + Er+RR+++N+++ +Lr+++P       +K++Ka++ + A+ YI+ L
  Pta002573 237 IILERKRREKLNQGLYTLRSIVPFI-----TKMDKASVIKDAITYINLL 280
                578*********************7.....6***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.307231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-13234285No hitNo description
SuperFamilySSF474591.7E-16236299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8237280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14237298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-14237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
XPNYPGWGLG LGPGPGPGLI LFPIYSDTLL EXIEIRHYVS KAFTPLSLSS SRRSTVEEME  60
GPIDYQTMEL LPDFDLLVNM EATIGNGLCD IVDTVQKQWI SGMDCSTPLS TVIDSKYSGG  120
VVICNGINAK EEVAERYNAS AAMVDQFQDK WWKDEEEYSI FSPCSDLQAS HKSSEIQMER  180
MASPDDLHLI ESTSSEMKCD FRNHSQGGNI FCQGSNHQSN GGIRSCKSTL SAASRNIILE  240
RKRREKLNQG LYTLRSIVPF ITKMDKASVI KDAITYINLL ENQVKEIQSE IAGLQSNNQS  300
DCSSCAVSHD DLSVAEINKD NVSAEVAX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244ERKRRE
2240245RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.211920.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-20bHLH family protein