PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002589
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 326aa    MW: 37074.1 Da    PI: 7.5169
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20693884PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-1382551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12188213126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd CkF+H+
  Pta002589 188 YQPDICKDYKETGYCGYGDACKFMHD 213
                67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.02E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577187215IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7187214IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-12188218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.6E-14247308IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139206.3E-8260303No hitNo description
SuperFamilySSF578506.25E-13260303No hitNo description
SMARTSM001842.0E-4261298IPR001841Zinc finger, RING-type
CDDcd001621.52E-7261302No hitNo description
PROSITE profilePS5008910.498261299IPR001841Zinc finger, RING-type
PROSITE patternPS005180276285IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAEPNETGPS QQQTCNFFKK PTRNKNIRKR EAEEVTEEEN KDGSAVVHKP KAAKKPDNKL  60
HFSSGPSKKS NIEDNDSETA GLPASTFFYE SSKEIQVQND SRATATLETE TEFTKDARAI  120
RERVLKQGEE SLKGNNPGDE KLYKGIHGYT DHKAGFRREH TVSGEKAGGA HGPLRASAHI  180
RSSIRFDYQP DICKDYKETG YCGYGDACKF MHDRGDYKSG WQMEREWQEA EKKRKNNLAL  240
GLLEEEEEEP DSDEDALPFA CYICRQPFED PVVTRCKHYF CEHCALKHHA RNKNCYVCNK  300
PTNGVFNTAH EIRRKMGKDN VGAKNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-7113181319RING finger protein 113A
5z58_M4e-7113181319RING finger protein 113A
6ff4_t4e-7113181319RING finger protein 113A
6ff7_t4e-7113181319RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.8610.0needle| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177265.11e-165zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-153C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A068UR941e-162A0A068UR94_COFCA; Uncharacterized protein
STRINGXP_010103154.11e-160(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-136C3H family protein