PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002667
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 322aa    MW: 36037.7 Da    PI: 8.9223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26631033PU_refUnigeneView CDS
PUT-157a-Pinus_taeda-71735PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-174897255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr+++ +g+WvAeIr p   gkr+r +lg+f tae+Aa+a+++a+  l+g
  Pta002667 48 QYRGVRQRS-WGKWVAEIRQP---GKRTRRWLGTFATAEQAAQAYDNAAILLYG 97
               59****999.**********8...557999******************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-3548111IPR001471AP2/ERF domain
PROSITE profilePS5103221.60148105IPR001471AP2/ERF domain
CDDcd000184.15E-3048107No hitNo description
Gene3DG3DSA:3.30.730.102.7E-2948105IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2048105IPR016177DNA-binding domain
PfamPF008472.3E-114995IPR001471AP2/ERF domain
PRINTSPR003676.2E-104960IPR001471AP2/ERF domain
PRINTSPR003676.2E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
KTMKGGNREA RSSAVGQENG GLRNPPSAPP SRKRKCKGKG GPDNIKFQYR GVRQRSWGKW  60
VAEIRQPGKR TRRWLGTFAT AEQAAQAYDN AAILLYGSRA HLNLQPSGWD HSKSSHTSKL  120
RPLLPRFTFK FPPAIHATNP NPNPNFFGAI PSGYLQTPLN PDFWPAGMKA AHTDVTYNHP  180
VIDPKRETTL EQRSVFQLEE IRVPTQQCNG AEVLHRESSP LKTDKVQENF GTENVDLQSD  240
RLGDPDQLSG IHGGIVGDEI NQGFYSETTG NITEPRNHID GESRDDNLAA SLQELQYSAA  300
PPSPGFMWHY DIKHDYYYDE TX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1548104562ATERF1
3gcc_A5e-1548104562ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.176270.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG0ZAE40.0G0ZAE4_PINTA; Putative ABI4-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-26ERF family protein