PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002777
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 315aa    MW: 35451.2 Da    PI: 6.0869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20498021PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-43748PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18193243255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+++AeIrd       +  r++lg+f+taeeAa a+++a+ k++g
  Pta002777 193 HFRGVRRRP-WGKYAAEIRD----SarQGSRVWLGTFDTAEEAAFAYDRAAYKMRG 243
                69*******.**********....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-30192251IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-23193253IPR016177DNA-binding domain
CDDcd000184.67E-28193251No hitNo description
PROSITE profilePS5103223.314193251IPR001471AP2/ERF domain
SMARTSM003805.5E-37193257IPR001471AP2/ERF domain
PfamPF008471.2E-12193243IPR001471AP2/ERF domain
PRINTSPR003671.7E-10194205IPR001471AP2/ERF domain
PRINTSPR003671.7E-10217233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNVLDQIRQH LLGESDGSPS FCTGSPAESC LTENYASSNS WNASEELDSG FVQSALVSDS  60
VEEEQTASEN QPCGGSGGTR FSRPVLSITV PRREYFEWER RSASWGADSR NFVTACCPAS  120
IRRCLSCDWG KLPLDENDSQ DMFLYGVLKE ATQKGWTPLT PKEIKNTDVK QINPRQETAR  180
EVSEKDQKSG GRHFRGVRRR PWGKYAAEIR DSARQGSRVW LGTFDTAEEA AFAYDRAAYK  240
MRGTKALLNF PLDLVAKSMD SLSEDESCCR KRKLNGQAQR GEEKRHHHGP NFEECGVESQ  300
ESIVVEDGEQ KRFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29191252364ATERF1
3gcc_A2e-29191252364ATERF1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.132770.0embryo| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026415277.12e-48ethylene-responsive transcription factor 1A-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-36ethylene responsive element binding factor 1