PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002828
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 312aa    MW: 35180.1 Da    PI: 6.4239
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25554061PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-26958PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-131764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+ +++  G g+W+t ++  g+ R +k+c++rw ++l
        Pta002828 17 RGSWTPEEDRILKTYIEANGVGRWSTLPQNAGLMRRGKSCRLRWMNHL 64
                     89********************************************97 PP
2Myb_DNA-binding49.41.1e-1570113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++
        Pta002828  70 RGHISADEEELIIRLHNLLGNR-WSLIAGRVP-GRTDNEVKNYWNT 113
                      667799****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2431264IPR017930Myb domain
SuperFamilySSF466897.59E-2716111IPR009057Homeodomain-like
SMARTSM007177.5E-111666IPR001005SANT/Myb domain
PfamPF002496.2E-121764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-211871IPR009057Homeodomain-like
CDDcd001671.16E-91964No hitNo description
PROSITE profilePS5129424.66565119IPR017930Myb domain
SMARTSM007176.7E-1569117IPR001005SANT/Myb domain
PfamPF002493.9E-1470113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2472119IPR009057Homeodomain-like
CDDcd001671.04E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRRTKGLSKP SDGVLHRGSW TPEEDRILKT YIEANGVGRW STLPQNAGLM RRGKSCRLRW  60
MNHLRPNVKR GHISADEEEL IIRLHNLLGN RWSLIAGRVP GRTDNEVKNY WNTRLSKKLG  120
STGDNLARSL ARRQIAKASP RIGMDNDAAV HLNSESPNFK FTPSLRSPTG STIVPEETRS  180
DIQLPSPESN NDGDRRTTVQ KDDTPHLEPL DIAQTNSCGV PPPEEIGQCS AQESGFVEQN  240
HDMNSLGKEQ SPDFSSTPYN TCLDSLLWFN YSPEMDDLFH CDYDQETSFS VSFSDHLQYI  300
SFGSQFWGDM IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-231511925128MYB TRANSFORMING PROTEIN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.123590.0root| shoot