PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta002857

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 311aa MW: 34553 Da PI: 5.5167

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25560374	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-41780	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	22.8	2.4e-07	1	28	103	128
NAM 103 kktLvfy..kgrapkgektdWvmheyrl 128 kk+Lv+y g+++k+ekt+Wvmh+y+l Pta002857 1 KKILVLYtnFGKHRKPEKTNWVMHQYHL 28 89***5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	15.653	1	47	IPR003441	NAC domain
SuperFamily	SSF101941	5.23E-9	1	47	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
KKILVLYTNF GKHRKPEKTN WVMHQYHLGV HEEEKEGELV VSKVFYQTQP RQCNWERTSS 60 DIAGSAITRN QSQEMTPIHP GDASFKNYPA AVMVGKAMTD INPGPSCTYN VDGVQQASAD 120 QFTFASCPRS LDEGISDSTT GKGSESSHCT PHSCDEHEEH EHDQHNAIND ALKRGFPMSA 180 GGGGHEIIAL RFNRRSDGVN VELKSSGRHR GQSSNADVTC MAGESQEPDH DGDLDAVEGS 240 LSRPQVLIPH EKIQNVAGKS FPQKLSFEED IFMYPTGMKE APALTNSQET DWLKYNTYWP 300 ESDSPENSRM I

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.14241	0.0	root\| shoot\| xylem