PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002895
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 308aa    MW: 33007.4 Da    PI: 8.9885
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-21092PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07104130127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC++f     C +Gd+C+FaHg+
  Pta002895 104 YKTRLCNRFGTDEKCMFGDKCHFAHGE 130
                9**********99************96 PP
2zf-CCCH38.51.9e-12274297226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                kt+lC ++a+ GtC +GdrC+FaHg
  Pta002895 274 KTKLCENYAK-GTCTFGDRCNFAHG 297
                9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.0753462IPR000571Zinc finger, CCCH-type
SMARTSM0035683461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-53560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-53659IPR000571Zinc finger, CCCH-type
SMARTSM003560.017103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535103131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-9103134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-14104134IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4104130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.7E-15181259IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.5E-15186255IPR004088K Homology domain, type 1
SMARTSM003221.5E-9186256IPR004087K Homology domain
PROSITE profilePS5008413.816187251IPR004088K Homology domain, type 1
PfamPF000131.2E-11189253IPR004088K Homology domain, type 1
CDDcd001058.03E-13189251No hitNo description
Gene3DG3DSA:4.10.1000.103.0E-15269303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-9270303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.075272299IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-8272298IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10274297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDPRKKPKTQ LHPNDNGDAN PNSTEKESIS TALGSKSKAC TKFFSPSGCP FGEGCHYLHY  60
VPGGVNAIPQ MPTLGNTFAA GSRKTVGLTP GVPSLDKPDP GLGYKTRLCN RFGTDEKCMF  120
GDKCHFAHGE KELRKGNLLA KDLERERIAG PFSSMAASAD LEGKPGGHSL YRDPPPGIAA  180
AANFGASSTA KISIDASLAS CIIGKGGANT KQIFRLTGTK MFIKEHESNP NLKNVELEGS  240
FEQIKQATAM VRELIMHNEL QSAKPSAHVP QNRKTKLCEN YAKGTCTFGD RCNFAHGANE  300
LREQPAGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128PRKKPKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.91480.0needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.11e-101PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-85C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA9NU060.0A9NU06_PICSI; Uncharacterized protein
STRINGXP_010265899.11e-100(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-46C3H family protein