PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002976
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 303aa    MW: 32815.6 Da    PI: 8.5882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24912609PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-12405PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.1e-212373256
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +++GVr+++ +gr++AeIrd ++    ++r++lg+f+taeeAa+a+++a++ l+g+
  Pta002976 23 HFRGVRRRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDNAARTLRGA 73
               69*******.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-312380IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-212380IPR016177DNA-binding domain
CDDcd000181.07E-282380No hitNo description
PfamPF008471.1E-132372IPR001471AP2/ERF domain
PROSITE profilePS5103222.8132380IPR001471AP2/ERF domain
SMARTSM003806.8E-352386IPR001471AP2/ERF domain
PRINTSPR003676.1E-112435IPR001471AP2/ERF domain
PRINTSPR003676.1E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAPRDELQNC GRGVGQTTAK EVHFRGVRRR PWGRFAAEIR DPWKKTRVWL GTFDTAEEAA  60
RAYDNAARTL RGAKAKTNFA TPRDNQSSSQ TSTVESWSSP KNVIVARSGP PSDASWRNFY  120
SAKYLDAARV TGNANGNPCF KEAAAAAAWK TIYVNRGVES RAIDLNISAL DFGRVDDAAT  180
INARAHESIN GAVALRCPAV NPFDCPSQVA LPGKLLLFDG IASRPEKRQK TCVRSGDEKL  240
SLGQQWSVLN KGAGVGEEVE TRNVQSDCDS SSSVVVDTEA PTEAKKTIPF LDLNLPASAE  300
DDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21779171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.111950.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M6X50.0A0A0K0M6X5_PINTB; ERF1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-25ERF domain protein 12