PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003034
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 300aa    MW: 33139.2 Da    PI: 6.4269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20929725PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-29931PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-1354103152
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52 
                rr++hn++Er RR+ +N +f  L  +lP+ a     +++sK++i+   +  I+
  Pta003034  54 RRATHNAVERARRETLNGRFLDLAAMLPNlA---AVRRPSKSAIVNSSIALIH 103
                8****************************55...9999********9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-1352133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.90E-953109No hitNo description
PROSITE profilePS5088812.90653105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1254132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-1054103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-659111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTIPSTSSET SPSPQPDQAH SHVASQAQQT AAAPTSAPAQ PPKRSSRRAN TAERRATHNA  60
VERARRETLN GRFLDLAAML PNLAAVRRPS KSAIVNSSIA LIHNQSRARI IAAREIRLLN  120
AEANALRQEL NEWRSRNALP RVEEPIRSAD FSTLMAVEDV EMGEEMIVSG RRSFDDGTGL  180
GDDDDYGDDG EDGGELISPE TAHHPSFVGL RPPMQYQQQQ QAQAQQAQLA AQQQQQQQQQ  240
QQQQLFEQQK AAMARAQQAQ FAQAQAQAQQ ARYAPAVHHQ HSQSQPVNLF TDNMFPTDLX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.188930.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG4TTG45e-73G4TTG4_SERID; Uncharacterized protein
STRINGG4TTG48e-74(Piriformospora indica)