PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003090
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 297aa    MW: 32298.1 Da    PI: 10.1175
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21718319PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-48604PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l  +v+++G+g W++I r          R+  ++k++w++
        Pta003090  5 KQKWTHEEEAALRTGVEKYGPGKWRAILRDPIlssclSSRSNVDLKDKWRN 55
                     79***************************999999999***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.148161IPR017930Myb domain
SuperFamilySSF466891.04E-16278IPR009057Homeodomain-like
SMARTSM007172.7E-7459IPR001005SANT/Myb domain
PfamPF002495.2E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-14556IPR009057Homeodomain-like
CDDcd116606.07E-19656No hitNo description
SuperFamilySSF467854.3E-14118200IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.7E-13118183IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.116120194IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.108.9E-15120202IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.7E-8125191IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQKWTH EEEAALRTGV EKYGPGKWRA ILRDPILSSC LSSRSNVDLK DKWRNMSVTA  60
NGWGSREKAR LALKRSKYIA KQSGRQLALS ALSNGNMDVV VTKPLSTVNP YLPSSNTKRS  120
ISRLDKLILD AVFTLKEPNG SNKSAIATYI EENQYPPPNF RRMLSSKLKS LVICGKLVKI  180
RQNYMINGSF RPDDEKVPKN EKVEKHVTTL SKNSSKKVVG EVGIAVKSEV DAEVSKMRRM  240
NAEEAAKAAA VAVAEAEAAI AAAEQAACEA AAAEAEAEAA EAFAEAAMMA LVNSRSC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.132190.0embryo| needle| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623052.13e-85telomere repeat-binding factor 1 isoform X1
RefseqXP_011623053.12e-85telomere repeat-binding factor 1 isoform X2
RefseqXP_011623054.12e-85telomere repeat-binding factor 1 isoform X2
TrEMBLB8LR631e-163B8LR63_PICSI; Uncharacterized protein
STRINGERN053522e-84(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-71telomere repeat binding factor 1