PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003098
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 297aa    MW: 33610.9 Da    PI: 9.9897
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21052218PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-9782548PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.26.9e-2136121286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt+ e+ +Li+a++e++ +l+rg+lk+ +Weev++ +  r +g+  ++s++qC++k+e+l+kry+ +k++++     + s++++f++++
  Pta003098  36 WTEVETNHLIDAYQEKWYALKRGQLKARHWEEVANLVflRCGGLepSKSSVQCRHKIEKLRKRYRTEKQQQGIT---RGSRWVFFERMD 121
                ***********************************9998999995578*********************99973...4457*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4583496IPR017877Myb-like domain
PfamPF138373.5E-2135123No hitNo description
SMARTSM005952.7E-943128IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAAASSSSGG GQQDDGGGGG IVAPHMIIHR KPPGPWTEVE TNHLIDAYQE KWYALKRGQL  60
KARHWEEVAN LVFLRCGGLE PSKSSVQCRH KIEKLRKRYR TEKQQQGITR GSRWVFFERM  120
DQLENGPRAD SVIVPNGRQL TEHDSDTADN NHNHNHNSDH PRSFHYQGGL PLDEAMAAPF  180
LSLKNGSVDG KFAASSRLNV KRRSIEPPSQ QPQFQSQPPP QPQPSSELAA VIRSLGEGFL  240
RIEQMKLEMQ RDNERLRMEM EMKRTEMILE SQQHMADVIA RALSSKKRAK RLQSPDL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.68370.0embryo| needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828075.17e-67trihelix transcription factor ASIL1
TrEMBLA0A0C9S7D61e-115A0A0C9S7D6_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_8971_1946 transcribed RNA sequence
STRINGERM954913e-66(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-28Trihelix family protein