PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003260
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 289aa    MW: 32998.5 Da    PI: 6.2576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25092763PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-44434PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.9e-13242848
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     Ed +l ++++ +G+g Wk I+++ g++R++k+c++rw++yl
        Pta003260  2 EDTILTEYIRVHGSGGWKDISKRAGLKRCAKSCRLRWLNYL 42
                     9**************************************97 PP
2Myb_DNA-binding55.61.2e-174893148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ ++eE+el+++++++lG++ W++Ia +++ gRt++++k++w++++
        Pta003260 48 RGNISPEEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHM 93
                     7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.779142IPR017930Myb domain
SMARTSM007174.9E-4144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-19249IPR009057Homeodomain-like
CDDcd001673.06E-7242No hitNo description
SuperFamilySSF466896.64E-25289IPR009057Homeodomain-like
PfamPF002491.6E-11242IPR001005SANT/Myb domain
PROSITE profilePS5129426.0434397IPR017930Myb domain
SMARTSM007171.0E-164795IPR001005SANT/Myb domain
PfamPF002499.3E-164892IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-265096IPR009057Homeodomain-like
CDDcd001671.73E-125293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEDTILTEYI RVHGSGGWKD ISKRAGLKRC AKSCRLRWLN YLRPDIKRGN ISPEEEELII  60
RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN THMSKKPCLS MNESQSNTSQ NLKTRSKSPV  120
PVQNRVFKTT ALKINPAARF SGTVRADGYS GDGCSNHISN EAFNFCNVKE TRKFSWRDYX  180
MNDSISDEES GNTAFAMTNN PVEAEATNSL SFMSHLADQE SPNRDHFQGD AITLSDSLLY  240
LNEKSSANCN LLPSPSDCPT DFALEEFYRG MEEFYDNVQD GDWIREFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2129634127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.212480.0root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287618.16e-56PREDICTED: myb-related protein Hv1
SwissprotQ9S9K93e-48MYB3_ARATH; Transcription factor MYB3
TrEMBLB8LMJ61e-129B8LMJ6_PICSI; Uncharacterized protein
STRINGXP_004287618.12e-55(Fragaria vesca)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]