PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003280
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 288aa    MW: 32111.3 Da    PI: 9.9663
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21718535PU_unrefUnigeneView CDS
gnl|UG|Pta#S24112728PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-32728PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16e-1547136186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +Li+   e+  +l+rg+lk+++W+evs+ +    +  +++++ +qCk++++ l+k+yk +k+  +++t    s++p++ +l+
  Pta003280  47 CWSEGATNTLIDSWGERYLNLNRGNLKQKHWREVSETVnaraAGLKLRKTDVQCKNRLDTLKKKYKLEKTKISNGTIIGPSRWPFYVKLD 136
                7*************************************98655566799***************************99999*****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2345138No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEDGDRAHNV VVHHQHHGGL TLGLPAPNLP AASLAANAGA GGSREDCWSE GATNTLIDSW  60
GERYLNLNRG NLKQKHWREV SETVNARAAG LKLRKTDVQC KNRLDTLKKK YKLEKTKISN  120
GTIIGPSRWP FYVKLDNLIG PSRSKHQALK HLHHHPQPHP QLQPLPPPLP PPLPSKRPDG  180
GLNSLSSGSL DATESLPSDG ADEKGKRGRK SSSSSESPVR ELAQAILKFG EIYERIENAK  240
QQQIIELEKQ RMEFTRDLEV QRMQLFMQTQ IEVAKMEHAK NGGTEHYL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.109250.0embryo| root| xylem
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LJG81e-39ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2R6XTL44e-74A0A2R6XTL4_MARPO; Uncharacterized protein
TrEMBLA9NWZ61e-73A9NWZ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.15e-32sequence-specific DNA binding transcription factors