PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta003288

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C2H2

Protein Properties

Length: 288aa MW: 32679.8 Da PI: 6.1768

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26643265	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-56176	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	149	170	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ n++rH++tH Pta003288 149 TCEQCSQRFCSSFNYRRHMQTH 170 8********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.369	148	170	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEPPGSGDVL SDSDFESMEQ SESGRKAQVS LLKFVADAVG NKLLLAFSRF GTHPMQWGHW 60 LDVLDEENLN TFFKDVNEEK LLPNESIQET ITTVDHSFSD SNVENLIPIN GIHSRIIAQG 120 VAAYAYAAAK FTGHAEWPLL GPSDVQKLTC EQCSQRFCSS FNYRRHMQTH RHTMNSKKED 180 LLKQSSELKA YWDKLQPDKA RDIVSFDNIM FEGISGDSII KYLTSFVHNS CILPLPKKFF 240 TAGASLLELL QIKSNYRCPS AELFHTLYLA SEKTFLQTRT SDYILKFX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.19025	0.0	root

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	3e-28	C2H2-like zinc finger protein