PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003299
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 288aa    MW: 30190.2 Da    PI: 9.0687
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25560000PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-982554PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.9e-29159259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
               +Dg+ WrKYGqK+ kg+++pr+YYrCt++  Cpv+k+v+r aed +++++tYeg+Hnh 
  Pta003299  1 SDGCLWRKYGQKMAKGNPCPRAYYRCTMSpCCPVRKQVQRLAEDRSILITTYEGSHNHM 59
               59**************************9899**************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.5E-31160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-28160IPR003657WRKY domain
PROSITE profilePS5081127.301161IPR003657WRKY domain
SuperFamilySSF1182901.2E-24161IPR003657WRKY domain
PfamPF031061.2E-25258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
SDGCLWRKYG QKMAKGNPCP RAYYRCTMSP CCPVRKQVQR LAEDRSILIT TYEGSHNHML  60
PPAATAMAST TAAAASMLLS GSSTSADNIA LNASFMAGAL MQHPCNTSTA SISASAPFPT  120
ITLDLTHNPN QMANAPGHMA ASNPRALAGL PAHAMPFVGM PHQFPTNTPQ GALFHGQSIY  180
NAPSMFAPLA GQLQRPQQPM MPTPPKLNIQ AGQPPTPQQQ QPSFIDTVSA ATAAITSDPN  240
FTAALAAAIT SLINNNNNAA NAISKPNSSQ ALNPSPQVAA HVKSDHTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-211631576WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.169360.0root| shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877768.11e-74probable WRKY transcription factor 31
SwissprotQ9XEC31e-61WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1U7ZFH64e-72A0A1U7ZFH6_NELNU; probable WRKY transcription factor 31
TrEMBLA7LHH61e-73A7LHH6_SOYBN; Transcription factor (Fragment)
STRINGXP_010252466.17e-73(Nelumbo nucifera)