PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003340
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 285aa    MW: 30723.9 Da    PI: 4.7722
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25093109PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-63589PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11557148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT eE+  l  +v ++G+g W+tI +          R+  ++k++w++++
        Pta003340  5 KLKWTSEEESALRAGVVKYGTGKWRTILKDPEfaaclAARSNVDLKDKWRNLM 57
                     689**********************************99************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.731161IPR017930Myb domain
SuperFamilySSF466893.05E-14258IPR009057Homeodomain-like
SMARTSM007171.7E-5459IPR001005SANT/Myb domain
PfamPF002491.3E-7556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-13557IPR009057Homeodomain-like
CDDcd116601.81E-21757No hitNo description
SMARTSM005268.9E-14115183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466893.05E-14119154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.105.3E-12119188IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.412120188IPR005818Linker histone H1/H5, domain H15
PfamPF005382.2E-9124186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGAPKLKWTS EEESALRAGV VKYGTGKWRT ILKDPEFAAC LAARSNVDLK DKWRNLMSSL  60
SPGGQGSKTP RLKLLAPVPI SSAAPQSPVT TSSAAAAILD HVISSPKSIS TSTAARNHSP  120
RCDYDDMILE ALTALRDPNG TDVATIASFM EERHQLPPSF RRALSSKLKR LVSQDKILRV  180
RNSYKLKDLG EMNQAVEGPL VVFDGSMEVC SNGMDASSVD MINEASMAAA MKLAEADAMS  240
ALAEEAAKEA EMDLRLAEEA DALLEAASSI FDDFTLDEVD GFYYS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.154880.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AA991e-115D5AA99_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-47MYB_related family protein