PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta003401

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 282aa MW: 31659 Da PI: 6.8815

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S20932531	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-90882547	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.1	5.1e-34	13	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgyW 83 lp G++F+P+d+el+ e+L+ k+++++ ++++ i+ +i++++P++Lp ++ + +fF++ +k+y+tg+rk+r+ + +W Pta003401 13 LPSGVKFDPSDQELI-EHLQGKISSDNssphplIDEFIPtIEGGdGICYTHPEKLP-GISRDGLVRHFFHRPSKAYTTGTRKRRKiqtpcaeagEGETRW 110 699**********.99*99997776543333333555545******.565666688***************856776665444778 PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+++v++ +g ++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Pta003401 111 HKTGKTRPVMV-NGMQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 156 *********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-37	8	175	IPR003441	NAC domain
PROSITE profile	PS51005	32.38	13	175	IPR003441	NAC domain
Pfam	PF02365	1.9E-15	14	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
XEREEALQIG AGLPSGVKFD PSDQELIEHL QGKISSDNSS PHPLIDEFIP TIEGGDGICY 60 THPEKLPGIS RDGLVRHFFH RPSKAYTTGT RKRRKIQTPC AEAGEGETRW HKTGKTRPVM 120 VNGMQKGCKK ILVLYTNFGK HRKPEKTNWV MHQYHLGSQE EEKEGELVVS KVFYQTQPRQ 180 CNWEKATDSR DAGKANRTEA TQVSERCTAG ETVSSSDRHN YSAYNPLEEQ ARDTHSSPNL 240 SIAQSRSESS DQGIDSXXXE SXHCTPSIGD XXVDLHQNKD XH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-13	3	156	5	140	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.2861	0.0	root\| shoot\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541001.1	1e-109	PREDICTED: uncharacterized protein LOC104814586
Swissprot	Q9M0F8	1e-107	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	E0ZFA1	1e-124	E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRING	XP_010541001.1	1e-108	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-109	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]