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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pta003713 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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| Family |
NAC |
| Protein Properties |
Length: 269aa MW: 30189.4 Da PI: 5.14 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Pta#S20493566 | PU_unref | Unigene | View CDS |
| PUT-157a-Pinus_taeda-54541 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 33 | 1.7e-10 | 2 | 28 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
+kk Lvfy g+apk +kt+W+mheyrl
Pta003713 2 IKKALVFYAGKAPKRSKTNWIMHEYRL 28
79***********************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
XIKKALVFYA GKAPKRSKTN WIMHEYRLAV VSRPARKKGS LRLDDWVLCR IYNILTSAEK 60
LALDQNESYM DVPMEAIDEI EMVNQPSSTS IEHSGIEQNG PSSDLLNKSG PSPTSHNGVP 120
PRALPMNTNN ISSPNLDFFQ KTITPSSAGT PKAPVQNTEF NPISSSINQQ WINYNSIDLL 180
SGLHTDSNSS KPSSSSNPIL EKEEVQSSLR LETSSPEEQK PFFNFSLEGL EYPFSHLDQI 240
TLPDPYQDYF TSWTGSDLPR FYANDMRFC
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-20 | 2 | 60 | 116 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-20 | 2 | 60 | 116 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-20 | 2 | 60 | 116 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-20 | 2 | 60 | 116 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 6e-20 | 2 | 60 | 119 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 6e-20 | 2 | 60 | 119 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 6e-20 | 2 | 60 | 119 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 6e-20 | 2 | 60 | 119 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 6e-20 | 2 | 60 | 119 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 6e-20 | 2 | 60 | 119 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 6e-20 | 2 | 60 | 119 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 6e-20 | 2 | 60 | 119 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 5e-20 | 2 | 60 | 116 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 5e-20 | 2 | 60 | 116 | 171 | NAC domain-containing protein 19 |
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