PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta003733

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C2H2

Protein Properties

Length: 268aa MW: 29492.5 Da PI: 9.8027

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26635933	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-41517	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	247	267	1	19
EEET..TTTEEESSHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrH 19 y+C C++ F++k +L+ H Pta003733 247 YRCDaeGCTMNFTSKQDLHLH 267 99*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00558	5.3E-9	6	126	IPR003347	JmjC domain
PROSITE profile	PS51184	16.927	9	268	IPR003347	JmjC domain
SuperFamily	SSF51197	2.17E-11	21	121	No hit	No description
Pfam	PF02373	7.7E-15	39	90	IPR003347	JmjC domain

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
RPGESDLSNT AWNMRIASRS EGSLLRYMPD EVPGVTSPMV YIAMLFSWFA WHVEDHDLHS 60 LNYLHMAASK TWYAVPGDAA PAFDEVVRRE GYGGQVNPIG FNCGKAANIA TPEWLKAAEE 120 AAVRRAAMEY PSMLSHQQLF NSRRNTQLGL KNGVKVNSAE GSQVSNLENT IVSKSQIVSH 180 HSSPTVELEG GPSIRLRSRS LKTKVEVVTK VAEKASLLQQ APIRKVSKGK KAAKAAPSKK 240 ADEKNGYRCD AEGCTMNFTS KQDLHLHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	1e-25	2	173	156	370	Transcription factor jumonji (Jmj) family protein
6ip4_A	1e-25	2	173	156	370	Arabidopsis JMJ13
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves and flag leaves. Expressed at low levels in roots, shoots, stems and panicles. {ECO:0000269\|PubMed:24280387}.

Functional Description ? help Back to Top
Source	Description
UniProt	Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269\|PubMed:24280387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269\|PubMed:24280387}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017421723.1	3e-60	PREDICTED: lysine-specific demethylase REF6-like
Swissprot	Q5N712	1e-57	JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBL	A0A314ZU79	9e-61	A0A314ZU79_PRUYE; Lysine-specific demethylase REF6
TrEMBL	A0A371I9P8	8e-60	A0A371I9P8_MUCPR; Lysine-specific demethylase REF6 (Fragment)
TrEMBL	A9S1X2	3e-59	A9S1X2_PHYPA; Predicted protein
STRING	evm.model.supercontig_4.49	2e-59	(Carica papaya)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]