PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003792
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 266aa    MW: 29817.9 Da    PI: 6.3652
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25552437PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-40257PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.52.4e-1445185128
        NAM  85 atgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                atg dk+++s+     ++ vg+kk Lvfy g+ap+g+kt+W+mheyrl
  Pta003792   4 ATGADKPITSTaskgVKKRVGVKKALVFYVGKAPSGSKTNWLMHEYRL 51 
                89*******9876655566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.116177IPR003441NAC domain
SuperFamilySSF1019417.59E-18477IPR003441NAC domain
PfamPF023653.8E-61751IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
XLEATGADKP ITSTASKGVK KRVGVKKALV FYVGKAPSGS KTNWLMHEYR LADINRPARK  60
KDSLRLDDWV LCRIYNRKIS AEKLALEQKE SFNDVPMETI DEKEMKAEPT STSFNHSTIE  120
QSNPSFDHLS KFGSSPTCYN AVPPGASPMN SNSRFQNLDF LQNSTTPFSG STLKAPVQNT  180
AFNPISPSQT NYNSTELISG LHDDFSCSKA SSFSEPIWEK EVESSFRLEN FSQKQQQSLF  240
NLDLEGLQSS FPHLDQISFS DAYQDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-2538399171NO APICAL MERISTEM PROTEIN
1ut4_B3e-2538399171NO APICAL MERISTEM PROTEIN
1ut7_A3e-2538399171NO APICAL MERISTEM PROTEIN
1ut7_B3e-2538399171NO APICAL MERISTEM PROTEIN
3swm_A3e-25383102174NAC domain-containing protein 19
3swm_B3e-25383102174NAC domain-containing protein 19
3swm_C3e-25383102174NAC domain-containing protein 19
3swm_D3e-25383102174NAC domain-containing protein 19
3swp_A3e-25383102174NAC domain-containing protein 19
3swp_B3e-25383102174NAC domain-containing protein 19
3swp_C3e-25383102174NAC domain-containing protein 19
3swp_D3e-25383102174NAC domain-containing protein 19
4dul_A3e-2538399171NAC domain-containing protein 19
4dul_B3e-2538399171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.193650.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020673301.11e-33NAC domain-containing protein 68
TrEMBLO650611e-136O65061_PICMA; ATAF1-like protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.14e-28NAC family protein