PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta003803

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 265aa MW: 29982.1 Da PI: 9.5302

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-11081	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.6	1.6e-23	205	264	1	60
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60 rW+k ev+ Li++r++m+ r+r++ lk+plWee+s+ m++ gf+rs+k+Ckekwen+nk+ Pta003803 205 RWPKPEVQSLIRLRSNMDVRFREAGLKGPLWEEISSGMASLGFQRSAKRCKEKWENINKY 264 8*********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.445	198	262	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.5E-4	202	261	IPR009057	Homeodomain-like
CDD	cd12203	1.03E-26	204	264	No hit	No description
Pfam	PF13837	2.4E-14	205	264	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
XGRELEALYS NSHGGSRSAN RTTGQEVTGI AGPEKTSNAA SLNLSSDNTS EDDHCNNTPL 60 QNPSPPKTLE QVNRKKRKRK HLASITAFFE SLVKQVTGHQ EELHRKFLEA IDRREQERLK 120 REETWKRQEM ARLNRETELR AQEHALASSR EAAIVAFLQK ITGQNLNLPT SVPPPSVPTE 180 PPTETQQDPD NLATDAAMPD PNCKRWPKPE VQSLIRLRSN MDVRFREAGL KGPLWEEISS 240 GMASLGFQRS AKRCKEKWEN INKYX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	78	RKKRKR
2	73	79	RKKRKRK
3	74	79	KKRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9S5C5	1e-83	A0A0C9S5C5_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12946_2942 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-44	Trihelix family protein