PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003850
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bZIP
Protein Properties Length: 263aa    MW: 29152.4 Da    PI: 7.0267
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25801598PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-54181PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.13.4e-07611001756
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                A+rsR RK+++i eLe+ v +L+ae ++   e+  l+++ 
  Pta003850  61 AQRSRVRKLQYISELERNVSALQAEESEVSAEAAFLNQQR 100
                89************************99999998888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.003850109IPR004827Basic-leucine zipper domain
CDDcd147039.31E-1551101No hitNo description
SuperFamilySSF579591.8E-561103No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-661100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
XGRASLTQDS ESATTSVVKR EEQQECDGHD ATSSGLEGKD TSHFKQDDPD VDQKRTKQHF  60
AQRSRVRKLQ YISELERNVS ALQAEESEVS AEAAFLNQQR IILTLENKAL KQRITGLAQE  120
KLIKDAEHEL LIKEAQRLKH LYQQQQMQQH SSLQPSHMHQ LPTSLDLDLQ QLQFSKLSLG  180
TVKPVDSMFS MSNGVFGQPK DTGGMSIVDG NDGGTTHRNG RSEVSKGNIP SSCMIAGTSK  240
KLDGRRMMTG GGLVPVDFML QNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.119070.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092330.12e-42uncharacterized protein At4g06598
RefseqXP_011092333.12e-42uncharacterized protein At4g06598
TrEMBLA0A2P2L5D12e-41A0A2P2L5D1_RHIMU; Uncharacterized protein
STRINGcassava4.1_009724m3e-40(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.22e-28bZIP family protein