PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003986
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ZF-HD
Protein Properties Length: 256aa    MW: 28350.9 Da    PI: 8.4115
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20504691PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-15823PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1054.7e-3356112259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  ++vrY+eC+kNhAa++Gg+a+DGCgEfmps geegt +alkC+AC+CHRnFHRreve 
    Pta003986  56 KTVRYRECMKNHAAAMGGNATDGCGEFMPS-GEEGTLEALKCSACDCHRNFHRREVEG 112
                  689**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2458113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.7E-3058110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-3059110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41860109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.69E-19192254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-31192255IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-27193250IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
XTAMDLGGQH GAAGGEIPMP MPMSTGSFIH ESAASLLINN VNAGHIEEEQ QIKSKKTVRY  60
RECMKNHAAA MGGNATDGCG EFMPSGEEGT LEALKCSACD CHRNFHRREV EGEPSCDCNF  120
RIRDQLSRKR SGVLVSSRAV PGTAAAGPPD PFAFPPNNLL PRLPSQAIMS YSTGPSESDE  180
LEGTFLSRPA ILKKRFRTKF TQEQKDRMLD FAEKVGWRIQ KHDEQAVQQF CQDIGVKRRV  240
LKVWMHNNKN TLGKKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-261942511875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.175990.0embryo| needle
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027331619.13e-85zinc-finger homeodomain protein 4
SwissprotQ9M9S01e-60ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA9NQC41e-164A9NQC4_PICSI; Uncharacterized protein
STRINGGLYMA07G40190.14e-82(Glycine max)