PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004163
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HB-other
Protein Properties Length: 249aa    MW: 28001.5 Da    PI: 7.3421
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25795503PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-56604PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.85.1e-05631022756
                HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
   Homeobox  27 aeereeLAkkl..........gLterqVkvWFqNrRakek 56 
                ++++  LA+k            ++ +qV +WFqNr++ +k
  Pta004163  63 RDTISSLAEKFsaaperagktLVQWKQVWTWFQNRKYAQK 102
                55555555555555555555578889**********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.600.00139104IPR009057Homeodomain-like
SuperFamilySSF466894.13E-740105IPR009057Homeodomain-like
PfamPF167191.8E-28142249IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
XAGDIYFPLS SETFPKRIIT GRWSYYMMGR PPVSGAPVFR FFPKEVQEME KFLEDGKAFI  60
PPRDTISSLA EKFSAAPERA GKTLVQWKQV WTWFQNRKYA QKAKGTKVPG KTVASHRDDS  120
RAKRVVTNSV AVPSGRTDQD ASEMEFEAKS SRDGAWYDVA SFVTHRMFES GDPLAELMPL  180
SACAEVRVRF AGFGAEEDEW VNVKKCVRQR SLPCEASECV AVLSGDLILC FQEGKEQALY  240
FDAHVLDAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-32141249198SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-32141249198SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-32141249198SHH1 SAWADEE
4iur_B2e-32141249198SHH1 SAWADEE
4iut_A2e-32141249198SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-32141249198SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-32141249198SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-32141249198SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-32141249198SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-32141249198SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275167.11e-102PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275168.11e-102PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ75e-83SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLD5ACD81e-133D5ACD8_PICSI; Uncharacterized protein
STRINGXP_010275166.11e-102(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-85sequence-specific DNA binding transcription factors;sequence-specific DNA binding