PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta004278

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

ZF-HD

Protein Properties

Length: 244aa MW: 27027.9 Da PI: 9.495

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26637636	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-7544	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	108.6	3.5e-34	45	101	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eC+kNhAas+G+ha+DGCgEfmps geegt +alkCaAC+CHRnFHRreve Pta004278 45 KSVRYRECMKNHAASIGTHAIDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRREVEG 101 679************************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-23	44	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.3E-31	47	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.9E-31	48	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.33	49	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.9E-20	170	242	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-31	174	242	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.1E-26	181	237	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
RPGPISVSYG PIHESSKLKI LTPGGNGAAA SDEQQQQVQQ AAAKKSVRYR ECMKNHAASI 60 GTHAIDGCGE FMPSGEEGTL EALKCAACNC HRNFHRREVE GEPPCYYCYN PRKDGRKRPS 120 GGSPLPLALP STSPSGVITR PSPQMIMAFG SGPTHENDQQ EHDLGSLHGL HGAQMAMPIM 180 KKRFRTKFTQ EQKDKMCSFA EKLGWRIQKH DEAAVQQFCM ELGVKRHVLK VWMHNNKHTL 240 GKKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-27	182	239	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.18272	0.0	needle\| shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024393207.1	1e-79	zinc-finger homeodomain protein 2-like
Refseq	XP_024393215.1	1e-79	zinc-finger homeodomain protein 2-like
Refseq	XP_024393224.1	1e-79	zinc-finger homeodomain protein 2-like
Swissprot	A2Z259	6e-64	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	5e-64	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	D5ADH8	1e-156	D5ADH8_PICSI; Uncharacterized protein
STRING	PP1S230_85V6.1	4e-79	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	3e-62	homeobox protein 21

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]