PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004389
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 238aa    MW: 27536.7 Da    PI: 7.2645
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24912497PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-52308PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.92.1e-28137194259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYG+K vk+s++pr+YYrC+ ++C vkk ver+++d+ vv++ Y g+Hnhe
  Pta004389 137 EDGYKWRKYGKKFVKNSTNPRNYYRCSDSNCDVKKTVERDSRDKGVVITSYLGRHNHE 194
                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29125196IPR003657WRKY domain
SuperFamilySSF1182905.89E-26128196IPR003657WRKY domain
PROSITE profilePS5081128.725131196IPR003657WRKY domain
SMARTSM007742.1E-29136195IPR003657WRKY domain
PfamPF031064.2E-22137194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGHFRAAIKV FKKEQAQLLQ EANCSEQMSQ RGESFEPSDF LDLEEGFNQS SMKEDGDDEV  60
NNIKDVNTGP SMQQEYADSL YSNPPCIRGF HLDHSSNVIQ SHELEEAISP KKSSRKRKAE  120
RPLKYAFLTR SEIDILEDGY KWRKYGKKFV KNSTNPRNYY RCSDSNCDVK KTVERDSRDK  180
GVVITSYLGR HNHESPCVIY YIAQPDILHQ QRQPTVSPLL QHLSSVRNYL PGNFEQHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-211291961077Probable WRKY transcription factor 4
2lex_A5e-211291961077Probable WRKY transcription factor 4
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.208660.0root| shoot
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-30WRKY DNA-binding protein 51