PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta004426

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

WOX

Protein Properties

Length: 236aa MW: 26558.8 Da PI: 9.7465

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26640734	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-15242	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.4e-19	24	84	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Lee F++ + +p ++e+++++++l ++ e+++++WFqNr+ + k+ Pta004426 24 KPRWNPKPEQVQILEEIFNSvKVNPPRDEIKKITAQLqefgEVGEANIFYWFQNRKSRSKQ 84 89***************99***********************************996 PP
2	Wus_type_Homeobox	103.6	1.3e-33	23	86	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQ++iLee+++s ++P+++ei++ita+L+e+G+++++N+fyWFQNrk+R++qkq Pta004426 23 PKPRWNPKPEQVQILEEIFNSVKVNPPRDEIKKITAQLQEFGEVGEANIFYWFQNRKSRSKQKQ 86 579***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-9	4	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.75E-13	19	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.37	20	85	IPR001356	Homeobox domain
SMART	SM00389	2.8E-9	22	89	IPR001356	Homeobox domain
CDD	cd00086	6.84E-8	23	86	No hit	No description
Pfam	PF00046	1.1E-16	24	84	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MPRQSTPQEG MRSHDDESST PDPKPRWNPK PEQVQILEEI FNSVKVNPPR DEIKKITAQL 60 QEFGEVGEAN IFYWFQNRKS RSKQKQRPQA AQRSRSGAES NRPDQSKALE ATTTANSLRH 120 IGESSSSAMP ASSFSMHQDN QFYRAQMNEV NTNQWSYMPT LGGMVTIIKG QGSMYSRPIT 180 VFINNREVEV PVGPINVRTV FGAKAVLVHS SGLPVLVNEY GFTLQGLQHG AIYYLM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2I4KAN7	1e-107	A0A2I4KAN7_PINPS; WUSCHEL homeobox protein