PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta004433

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 236aa MW: 27003.5 Da PI: 9.3598

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26639566	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-37948	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.7	2.3e-26	47	129	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi++rre++ ++++k++k+lW+++s mrergf rsp++C++kw+nl k+ykk k++ ++ + s +++ +++le Pta004433 47 WGHDEIRALIALRREIDGLFNTSKSNKHLWDKISLIMRERGFDRSPTMCTDKWRNLLKEYKKAKHHHDSH--DGSAKMSCYKDLE 129 ********************************************************************97..6667899999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.573	39	103	IPR017877	Myb-like domain
SMART	SM00717	0.0015	43	105	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.81E-5	44	142	IPR009057	Homeodomain-like
Pfam	PF13837	6.1E-19	46	131	No hit	No description
CDD	cd12203	6.06E-27	47	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEVVTNGMQL QAQVQQHHHH HHMLLSSDIN GEDHEIKTTP KKRAEVWGHD EIRALIALRR 60 EIDGLFNTSK SNKHLWDKIS LIMRERGFDR SPTMCTDKWR NLLKEYKKAK HHHDSHDGSA 120 KMSCYKDLEE LLRERAKAAP YRSPNKVADL DSYPHFSPKG TGRSPFNMER RLDHERLPLA 180 MPLSDATAAN GTPPWNWRDA AGNGGENHTP YNGKVILVKW GDITRRIGID GTAEAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-40	41	127	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.21288	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248872.1	2e-96	PREDICTED: trihelix transcription factor GT-1-like
Swissprot	Q9FX53	2e-82	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A9NQR4	1e-152	A9NQR4_PICSI; Uncharacterized protein
STRING	XP_010248872.1	8e-96	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	2e-84	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]