PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004471
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 235aa    MW: 26263.4 Da    PI: 8.471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20504578PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-9928PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-202069255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrdp +   ++r++lg+f+taeeAa+a++ a+++l+g
  Pta004471 20 HFRGVRKRP-WGRFAAEIRDPMK---KTRVWLGTFDTAEEAARAYDSAARALRG 69
               69*******.**********843...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-142069IPR001471AP2/ERF domain
PROSITE profilePS5103223.0512077IPR001471AP2/ERF domain
SMARTSM003802.7E-382083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-322077IPR001471AP2/ERF domain
CDDcd000188.15E-332077No hitNo description
SuperFamilySSF541716.28E-222077IPR016177DNA-binding domain
PRINTSPR003674.2E-112132IPR001471AP2/ERF domain
PRINTSPR003674.2E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLTQPKVAPK DVGSAYKEVH FRGVRKRPWG RFAAEIRDPM KKTRVWLGTF DTAEEAARAY  60
DSAARALRGP KAKTNFALVP PCDDRSTSLS STVESWSSPK NNTNNNTRKN LSLNKADGIT  120
HKIDLNIAQE EFGRKGSVPY LEDKILNISK KQKTFKRSCA PDRAAEAYNW SRQQYPQMGF  180
DPNACHSDCD SSSSVVDDDE VGTSSLRPQG VRLLPDLNLP PCDDEEDFSS MLLHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-212078261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.175650.0needle| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QXH72e-90A0A0C9QXH7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_1413_2210 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-23erf domain protein 9