PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004502
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 233aa    MW: 25719.3 Da    PI: 6.6991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25802426PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-18482554PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-055880123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++Cp C++sF++   L  H rtH
  Pta004502 58 HECPVCHRSFPSGQALGGHKRTH 80
               79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-45681IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.61E-55682No hitNo description
PfamPF139124.1E-145781IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2635885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
RPGGGHRASC HYKSKSLFPA LQTDEGFKEE AVHWSINGPS VESYKQSLCT EIKKVRVHEC  60
PVCHRSFPSG QALGGHKRTH STPPATNMHT YTSHSTTEQQ QFSPPSRTET LDLNVPAEDA  120
NDCTQLQHSS AVSVNLGADS TSWPPYDHQL VAYNSSQPWW VESHQPGLVV REDEADSKLG  180
SNSGLAEAQT RDAREPVLRE YEAHDKLGSN SRSVKGQDLG YKQASLLFII ILT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.142070.0xylem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.16e-13C2H2-like zinc finger protein