PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004524
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 232aa    MW: 24960.8 Da    PI: 8.3662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21053930PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-20142PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-203384156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++++GVr ++ +gr++AeIrdp +   ++r++lg+f+taeeAa+a+++a+++l+g+
  Pta004524 33 THFRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDTAEEAARAYDNAARNLRGA 84
               589*******.**********743...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.82E-313390No hitNo description
PfamPF008479.9E-143383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-323491IPR001471AP2/ERF domain
SMARTSM003805.5E-373497IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-223492IPR016177DNA-binding domain
PROSITE profilePS5103222.4843491IPR001471AP2/ERF domain
PRINTSPR003674.1E-113546IPR001471AP2/ERF domain
PRINTSPR003674.1E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAVDTIQMAR VGVKMKIGGG GCEEEASSAV KETHFRGVRK RPWGRFAAEI RDPLKKTRVW  60
LGTFDTAEEA ARAYDNAARN LRGAKAKTNF LLSPHNDIST KGSSSAALSS NSTTSAASGQ  120
IQNQWPLRPY FYSNQGPAIV SFSCAPAASL SPTDNNQCGG SSCVTRGSAS RNSAEENQTV  180
YNKRGKFLFG IDLMISCDSQ QQEDDAEICS SARQKAPFLL DLNLPPAAND VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-213192264ATERF1
3gcc_A3e-213192264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.139550.0embryo| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH9W9961e-94H9W996_PINTA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-23erf domain protein 9