PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta004554

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

TCP

Protein Properties

Length: 231aa MW: 24852.7 Da PI: 10.3042

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S21053208	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-47643	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.3	9.5e-41	79	205	2	100
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq a+pai+++tgt++++a+ + ++s +ss+s+ s++ Pta004554 79 PAKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQHAEPAIIAATGTGTIPANYStLNVSLRSSNSSISAShhtkalplafhg 178 6899*****************************************************************7776555555555522222223334444444 PP TCP 89 ...............kaaksaakskks 100 ++ ++ ++ +++ Pta004554 179 tlglgpnvdmgarldHQLRARNEWERA 205 444443333333332222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-39	84	194	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.07	85	139	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MASASASAYE GRGGLVGSFV PTSSSSRVDS HMNIASTQPV DASLAMSMSS ATTSNNETQI 60 STSQQQQETV ALDPNKKAPA KRSSTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS 120 DGETIEWLLQ HAEPAIIAAT GTGTIPANYS TLNVSLRSSN SSISASHHTK ALPLAFHGTL 180 GLGPNVDMGA RLDHQLRARN EWERAENRTS MELAVASNRQ SEDRRCRLVV V

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.19198	0.0	embryo

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003592963.1	5e-53	transcription factor TCP8 isoform X1
Refseq	XP_004485466.1	8e-53	transcription factor TCP8
Refseq	XP_013462384.1	2e-53	transcription factor TCP8 isoform X2
Refseq	XP_021890638.1	1e-53	transcription factor TCP15
Refseq	XP_024632177.1	2e-53	transcription factor TCP8 isoform X2
TrEMBL	A0A0D6R148	2e-98	A0A0D6R148_ARACU; Uncharacterized protein
STRING	evm.model.supercontig_128.6	5e-53	(Carica papaya)
STRING	XP_004485466.1	3e-52	(Cicer arietinum)
STRING	AES63214	2e-52	(Medicago truncatula)
STRING	AES63253	2e-52	(Medicago truncatula)