PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta004651

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Dof

Protein Properties

Length: 226aa MW: 25428.2 Da PI: 8.8516

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25794882	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-54427	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.8	1.7e-36	84	141	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++k ++cprC+s++tkfCy+nny+++qPr++C+ C+ryWt+GG+lrnvPvG+grrknk Pta004651 84 PTKLVPCPRCESMDTKFCYFNNYNVNQPRHYCRRCQRYWTTGGSLRNVPVGAGRRKNK 141 67889****************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	73	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-30	87	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.922	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVAVNAEIMP KFEGKSAKSL DSTFKLFGRT IVVKNPCDSS SNGIHVDGIP AEAVNSAVPK 60 ASETHHHDEK QKQNEDSEKV GKKPTKLVPC PRCESMDTKF CYFNNYNVNQ PRHYCRRCQR 120 YWTTGGSLRN VPVGAGRRKN KPCFGINHRQ IMDDTETGWN DVQGQASRGN SDKLVKVEPF 180 YPEFEKFREG LNEAATPKEG NSKPQSIIQS QFDDYSHPST VNLARX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.3937	0.0	xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021282282.1	7e-37	cyclic dof factor 3-like
TrEMBL	T2B8A9	1e-161	T2B8A9_PINPS; Dof8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	3e-36	Dof family protein