PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004654
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 226aa    MW: 24954.4 Da    PI: 7.292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20925498PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-6182553PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000281533523
               TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  5 dCgksFsrksnLkrHirtH 23
               dCg++Fsr +++  H+ t+
  Pta004654 15 DCGRVFSRVESFIEHQDTC 33
               9***************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
QAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DTCITAKERA AFGFCIDQPS LPSLTAGTRS  60
SNDTLSATRS GHSSLGIQFD SGRLHEQAAN WLNVELRELQ FLPVRHQSDT LETSRRQGHN  120
AAATVTRDHI RSLAYEPRSN LSTSPPKEHR FMDDTSGSPL RLQLSIGLCS DTSANSEKKS  180
YVKSDQFSAV NERQRSHRAG IQIALGLTLS SNDSFPGDNN MESNYE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.128520.0needle| xylem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.21e-17indeterminate(ID)-domain 14