PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004688
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bZIP
Protein Properties Length: 225aa    MW: 25452.1 Da    PI: 7.9927
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S16892117PU_refUnigeneView CDS
PUT-157a-Pinus_taeda-8780PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.62.6e-1395153563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                ++ rr+ +NRe+ArrsR RK++ ++eL+  v+ + +eN++  +  + l++ +++   ++
  Pta004688  95 RKKRRMLSNRESARRSRMRKQKHLDELRAQVAHMRSENRQILSSFDILTQRYSQALEDN 153
                6789********************************************99999877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-1491155IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-893144No hitNo description
PROSITE profilePS5021710.80693148IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-1295146No hitNo description
PfamPF001704.0E-1095152IPR004827Basic-leucine zipper domain
CDDcd147021.11E-1896147No hitNo description
PROSITE patternPS00036098113IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVSNGSFHMG TVDTRGGQDF LSRECYESLL NFNNFMLYPP PTLNTNSSPE VCKPSPKGRY  60
IRQDSIASTS QSAQTACNSA SDEAEEQQTV MIDERKKRRM LSNRESARRS RMRKQKHLDE  120
LRAQVAHMRS ENRQILSSFD ILTQRYSQAL EDNRLLKVQA MELSQQLHQF QQAIAASQSS  180
AAPNFALNAL QASHRHNNNN NIISIDDAVD NNTNSLTQCP DILLX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194115RKKRRMLSNRESARRSRMRKQK
2107114RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.161740.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH9MB623e-65H9MB62_PINRA; Uncharacterized protein (Fragment)
TrEMBLH9WH213e-65H9WH21_PINTA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.18e-25basic leucine-zipper 42