PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004730
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GRAS
Protein Properties Length: 222aa    MW: 24662.8 Da    PI: 7.1262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20925809PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-115382547PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS221.54.3e-684214155374
       GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                 e+le+tg+rL++fA++l++pfef++ va+++ +l++e+L+v++g+alaV++ +  h+l+d ++s ++    +L+l+++lsPkv++vveq+++h ++sFl
  Pta004730   4 LEALEATGKRLSDFAHTLNLPFEFHP-VADKVGKLDPERLKVNRGDALAVHWLH--HSLYDVTGSDTN----TLRLLQRLSPKVITVVEQDLSH-GGSFL 95 
                5789**********************.7*************************9..999999999999....**********************.789** PP

       GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                 rf+ea++yysalfdsl a++p++s++r+ vE++ll+rei+n++a  g +r+ + + + +Wr++l++ GFkp++l  +aa+qa lll +++ +gy++ ee
  Pta004730  96 SRFVEAIHYYSALFDSLGASYPEDSHDRHLVEQQLLSREIKNILAVGGPARTGEVK-FDNWRDQLKQTGFKPISLAGNAATQATLLLGMFPCQGYTLMEE 194
                **************************************************998887.******************************************* PP

       GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                +g+l lgWk+  L+++SaWr
  Pta004730 195 NGTLKLGWKGLCLLTASAWR 214
                *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.1221194IPR005202Transcription factor GRAS
PfamPF035141.5E-654214IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
XTSLEALEAT GKRLSDFAHT LNLPFEFHPV ADKVGKLDPE RLKVNRGDAL AVHWLHHSLY  60
DVTGSDTNTL RLLQRLSPKV ITVVEQDLSH GGSFLSRFVE AIHYYSALFD SLGASYPEDS  120
HDRHLVEQQL LSREIKNILA VGGPARTGEV KFDNWRDQLK QTGFKPISLA GNAATQATLL  180
LGMFPCQGYT LMEENGTLKL GWKGLCLLTA SAWRPAHHGL IY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1182215166379Protein SCARECROW
5b3h_D1e-1182215166379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.187920.0needle| root| shoot
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788032.11e-124protein SCARECROW 2-like isoform X2
RefseqXP_010931426.11e-124protein SCARECROW 2
SwissprotQ2Z2E91e-118SCR_IPONI; Protein SCARECROW
TrEMBLA0A0B4U7W61e-156A0A0B4U7W6_PINRA; SCR
STRINGXP_008788030.11e-123(Phoenix dactylifera)
STRINGXP_010278894.11e-123(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-117GRAS family protein