PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004756
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family LBD
Protein Properties Length: 221aa    MW: 24082.9 Da    PI: 7.1231
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26638686PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-28075PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.55.1e-2979118101
     DUF260  18 lapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                +apyf ++q +++fa+vhk+FGasnv+kll+++p  +r +a+ +++yeA+ar+rdPvyG+vg+i  lq+q++++++ela ++++l
  Pta004756   7 IAPYFDSDQgAAHFAAVHKIFGASNVSKLLQNIPVPKRCEAVVTICYEAQARLRDPVYGCVGHIYFLQHQVKSSQSELANVQAQL 91 
                79*****9989*********************************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.945191IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-27788IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MREWVHIAPY FDSDQGAAHF AAVHKIFGAS NVSKLLQNIP VPKRCEAVVT ICYEAQARLR  60
DPVYGCVGHI YFLQHQVKSS QSELANVQAQ LATRLQAAAS LQQVHHHGHS ESCLSSAAST  120
GYAGTSNSPY DHHHHHQLQD HAVPLSMSFH VPAVPASSSA AAAAHAHVNP YTDRLKEESA  180
APSSFHALPY STHHVHSLPP LQIEPGSFCP TVQQQMQDAF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2078428104LOB family transfactor Ramosa2.1
5ly0_B4e-2078428104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9D32e-39D5A9D3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-35LBD family protein