PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004763
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 221aa    MW: 24091.6 Da    PI: 7.7054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24915683PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-54132PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17122173256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr +  +g+++AeIrdp ++g  +r++lg+f taeeAa a+++a+ +++g+
  Pta004763 122 HYRGVRKRT-WGKFAAEIRDPAKQG--ARVWLGTFVTAEEAALAYDRAAFRIRGA 173
                69****887.**********96654..*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-22122181IPR016177DNA-binding domain
PROSITE profilePS5103223.644122180IPR001471AP2/ERF domain
SMARTSM003801.5E-34122186IPR001471AP2/ERF domain
CDDcd000181.32E-28122180No hitNo description
Gene3DG3DSA:3.30.730.109.2E-31122180IPR001471AP2/ERF domain
PfamPF008477.5E-12122172IPR001471AP2/ERF domain
PRINTSPR003674.6E-10123134IPR001471AP2/ERF domain
PRINTSPR003674.6E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEITAGQSLS MNMLELIRHH LLEVEDEMDI MHLYHPGGND PSSSSSSVSS SRVSSEYLHG  60
TAAATASGSC QNRSPSEDNE SSQYSSASTS VSTVTRRTEA VNINVKPQPR EEQSVEKNNQ  120
IHYRGVRKRT WGKFAAEIRD PAKQGARVWL GTFVTAEEAA LAYDRAAFRI RGAKAVLNFP  180
LAFASISENG SAVGHMGNKR KRGRGETNEE WAACDRGSSV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-32122181564ATERF1
3gcc_A6e-32122181564ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.208270.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019446054.16e-35PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA9NMA31e-60A9NMA3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-26ERF family protein