PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004786
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25266 Da    PI: 9.9446
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-9494PU_refplantGDBView CDS
PUT-157a-Pinus_taeda-9496PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.47.9e-28956148
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
               k+ien+  rqvtf+kRr g++KKA+ELSvLCda+va+i+fss+gklye
  Pta004786  9 KKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYE 56
               68*********************************************9 PP
2K-box805.6e-27881799100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +++  e+++qe++ Lk++i++L+ ++R l+Ge+L+s s++eL qLe++L+++++++R+kK+el+l++i+ lq ke+ l+ +n++L+++lee
  Pta004786  88 SNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLEE 179
                56677899*******************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-31186IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.11E-41279No hitNo description
PRINTSPR004042.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.1E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2389177IPR002487Transcription factor, K-box
PROSITE profilePS5129714.43193183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGRGKIEIKK IENSVHRQVT FCKRRGGLMK KAYELSVLCD ADVALIVFSS RGKLYELGTS  60
NNNNNRSMRS ILERYQKCSQ TAKHMNFSNN TSDEKMKQEI NLLKQQIDQL KLTNRYLMGE  120
GLGSVSFEEL TQLESRLQRG INQVRAKKHE LMLDEIRALQ SKEHTLRINN MMLQERLEEC  180
TNGKRLSSLL THGFTTLLPN QHVPSGYDLS NQSLSSNVEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-18180174MEF2 CHIMERA
6byy_B3e-18180174MEF2 CHIMERA
6byy_C3e-18180174MEF2 CHIMERA
6byy_D3e-18180174MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.94550.0root| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds (Ref.1). Expressed in endotesta cell layer of developing seeds (PubMed:28369525). {ECO:0000269|PubMed:28369525, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674454.11e-60PREDICTED: MADS-box transcription factor 3-like isoform X1
RefseqXP_018674455.19e-61PREDICTED: MADS-box transcription factor 3-like isoform X2
SwissprotA0A217EJJ04e-57AG11S_VITVI; Agamous-like MADS-box protein AGL11
SwissprotF6I4574e-57AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A0K0M6Z81e-151A0A0K0M6Z8_PINTB; DAL5
STRINGGSMUA_Achr10P21480_0012e-58(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.15e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]