PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004821
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24919.2 Da    PI: 9.0539
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20928405PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-109282552PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.1e-291059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rienk+ rqvtfskRrng++KKA ELS+LCdaeva+i+fs+++klye++s
  Pta004821 10 RIENKISRQVTFSKRRNGLMKKAAELSILCDAEVALIVFSNKDKLYEFAS 59
               8***********************************************86 PP
2K-box54.93.8e-19811431274
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                ++ ++++ el+ Lk+e++ Lqr+ RhllGedL++L   +Lq+LeqqLe++l+k+  +K++ll 
  Pta004821  81 KDPQNSDIELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTKEQLLE 143
                56799999****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.861161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.70E-41270No hitNo description
SuperFamilySSF554551.11E-32274IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.65183173IPR002487Transcription factor, K-box
PfamPF014866.8E-1584144IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRGRVQLRR IENKISRQVT FSKRRNGLMK KAAELSILCD AEVALIVFSN KDKLYEFASS  60
SMTKILERYR RRSNLIQDIG KDPQNSDIEL THLKEEVDRL QRSRRHLLGE DLHQLGATDL  120
QHLEQQLEEA LQKVTLTKEQ LLEGINKSLL RNFSELEGQY PRDHYSLPIS GRSLHSTTEN  180
YPQGEPTLQI GCPSALTGIT TTAQRQSRNY DAEGWMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-22169169MEF2C
5f28_B4e-22169169MEF2C
5f28_C4e-22169169MEF2C
5f28_D4e-22169169MEF2C
6byy_A5e-22169169MEF2 CHIMERA
6byy_B5e-22169169MEF2 CHIMERA
6byy_C5e-22169169MEF2 CHIMERA
6byy_D5e-22169169MEF2 CHIMERA
6bz1_A5e-22169169MEF2 CHIMERA
6bz1_B5e-22169169MEF2 CHIMERA
6bz1_C5e-22169169MEF2 CHIMERA
6bz1_D5e-22169169MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.156450.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020703300.12e-54agamous-like MADS-box protein AGL9 homolog
TrEMBLQ58A828e-58Q58A82_GINBI; MADS-box transcription factor GbMADS1
STRINGAquca_013_00477.13e-50(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.14e-42MIKC_MADS family protein