PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004872
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family LBD
Protein Properties Length: 215aa    MW: 24164.3 Da    PI: 6.4212
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25801307PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-33392PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.13.7e-44111101100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +Ca+Ck+lrr+CakdCv+apyfpa+qp+kfa+vhk+FGasnv+k+l++lp ++r da+ss+vye++ar+rdPvyG+vg i+ lqqq+++l+ +la++++e
  Pta004872  11 PCASCKLLRRRCAKDCVFAPYFPADQPQKFACVHKVFGASNVSKMLQELPVHQRGDAVSSMVYESNARVRDPVYGCVGAISYLQQQVANLQMQLARAQAE 110
                7**********************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.91710111IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-4311108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGTSKTSGSS PCASCKLLRR RCAKDCVFAP YFPADQPQKF ACVHKVFGAS NVSKMLQELP  60
VHQRGDAVSS MVYESNARVR DPVYGCVGAI SYLQQQVANL QMQLARAQAE IMCMHMQQQE  120
ALLSDNTDNI IDSKQAIMGL LSESTDNIDT KQGIMGRMDD HQFHYDQIHA NNYHHPSDCC  180
TSSHDSSHQL LTHDQTVYDA LDIKEILWTR YSMLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4841124112LOB family transfactor Ramosa2.1
5ly0_B7e-4841124112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102144.17e-69LOB domain-containing protein 12-like
SwissprotQ8LBW34e-66LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A438FA861e-67A0A438FA86_VITVI; LOB domain-containing protein 12
STRINGXP_010099465.16e-68(Morus notabilis)
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]