PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004900
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 214aa    MW: 23750 Da    PI: 9.5293
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25633733PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-38442PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.8e-102769855
               HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                Er+RR+++N+ + +Lr+++Pk +      K++K +i   A+ Y+ +Lq
  Pta004900 27 TERKRRKKLNDTLYTLRSVVPKiS------KMDKQSIIGDAISYVLDLQ 69
               6*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.1071968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-152489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-92574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-132785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-72769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.91E-92873No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
XDPDMMGGSK SAGKINYLQA ASKNLYTERK RRKKLNDTLY TLRSVVPKIS KMDKQSIIGD  60
AISYVLDLQK TIREIESEIE GLRSSSKGAH TQTIPQTVNH LANAELVKRS VESSDTKKSM  120
DKLKHAKVLQ VEICNGGEGG IYHVRIEGKK ETGGLVKLTR ALESLPLQIM NSNICCFDEA  180
IHYSLTVNVK SLGNVNTAKL EDMIRKTTTS DCFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12734ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.64760.0needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN61e-128B8LRN6_PICSI; Uncharacterized protein