PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004907
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 214aa    MW: 23484.3 Da    PI: 8.7431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26629355PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-66101PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.7e-213787155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  Pta004907 37 THFRGVRKRP-WGRFAAEIRDpWK----KTRLWLGTFDTAEEAARAYDNAARNLRG 87
               589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-133787IPR001471AP2/ERF domain
CDDcd000189.04E-313797No hitNo description
SuperFamilySSF541717.85E-223896IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-313895IPR001471AP2/ERF domain
PROSITE profilePS5103222.7873895IPR001471AP2/ERF domain
SMARTSM003802.2E-3638101IPR001471AP2/ERF domain
PRINTSPR003676.7E-113950IPR001471AP2/ERF domain
PRINTSPR003676.7E-116177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAVDTMQMAR DGLKMEIGGV GVGGGCDETA VSAVKETHFR GVRKRPWGRF AAEIRDPWKK  60
TRLWLGTFDT AEEAARAYDN AARNLRGPKA KTNFAIHDDS AALFSSGGGR AVPSQRQEWP  120
SRPTFCSKQE PSEISNLSAI PAHPSVPGND QVSSRVMENR AASTKRQKLL FGIHLLESSH  180
NLQQEEDAVI YSSSRRQPPF LLDLNLPPAA NDVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2035100268ATERF1
3gcc_A4e-2035100268ATERF1
5wx9_A1e-191594171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.149970.0embryo| root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278126.15e-39PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLE0ZGY91e-116E0ZGY9_PICSI; Ethylene-responsive element binding factor-like protein
STRINGXP_010278126.12e-38(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-24ethylene responsive element binding factor 3