PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004933
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 213aa    MW: 22948.3 Da    PI: 10.4462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24121808PU_refUnigeneView CDS
PUT-157a-Pinus_taeda-18561PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-201766255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrd ++    + r +lg+f+taeeAa+a++ a+ +l+g
  Pta004933 17 HFRGVRKRP-WGRYAAEIRDpWK----KVRLWLGTFDTAEEAARAYDTAAISLRG 66
               69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-121766IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-221776IPR016177DNA-binding domain
PROSITE profilePS5103223.1961774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-311774IPR001471AP2/ERF domain
CDDcd000185.10E-271775No hitNo description
SMARTSM003808.7E-391780IPR001471AP2/ERF domain
PRINTSPR003671.1E-101829IPR001471AP2/ERF domain
PRINTSPR003671.1E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAPSNNRRDD NGARGVHFRG VRKRPWGRYA AEIRDPWKKV RLWLGTFDTA EEAARAYDTA  60
AISLRGPKAK TNFAYSSPSS SSSLHNNQSS SQNSSTVESW PSAAPVTRSG DLELPASFLP  120
RLGVSTGRRV LNGGNPRSGR RRSLSEKNSG RKAEGAEART TLSDSDSSSS AVLDGETQAL  180
PPPPPPAAKK PFLLDLNLPP PLDDDEEPQQ IGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-211073271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.6170.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ7H5K81e-105J7H5K8_9SPER; Transcription factor 1 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-21ERF domain protein 12